PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G327300.3
Common NameB456_009G327300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 327aa    MW: 36363.1 Da    PI: 5.9441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G327300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-1253101255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h+  E+rRR++iN++f+ Lr+++P+     ++K + a+ L + veY+++Lq
  Gorai.009G327300.3  53 RSKHSVTEQRRRSKINERFQVLRDIIPNT----DQKRDTASFLLE-VEYVQYLQ 101
                         899*************************8....799999999988.89999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1549123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-2049123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.40751101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-1053101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.33E-1253105No hitNo description
SMARTSM003532.8E-757106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MRTGKQSQEE EEYEEEEFGS KKQGPSSNQI MSGNAINNSN KGGKNSDKAN AIRSKHSVTE  60
QRRRSKINER FQVLRDIIPN TDQKRDTASF LLEVEYVQYL QEKVKKYEGS YQEWNSEPAK  120
LMPWRNSHWR VQSFVGQQQA IKNGSDPGSA FAGKFNENNI NINPTMIASA QNPVESDPVR  180
DTMSKAMDQQ PELGSRGMPL PIQGDNMLVH PLQRPVSEAQ PTECFIGNDT VNQQEDLTIE  240
GGTINISSVY SEELLNSLTQ ALQSAGLDLS QANISVQIDL GKHANRGLTS GTSAKDPQSA  300
PFQAMTHHRD VSNGEESDHA QKRMKK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448295.10.0PREDICTED: transcription factor BIM2-like isoform X1
SwissprotQ9CAA41e-117BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0D2QRZ60.0A0A0D2QRZ6_G
STRINGPOPTR_0008s11120.11e-140(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-105BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]